PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.008G007400.2
Common NamePHAVU_008G007400g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 177aa    MW: 19111.3 Da    PI: 9.5781
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.008G007400.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.000224466123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++C + F ++  L  H++ H
  Phvul.008G007400.2 44 YECQYCFREFANSQALGGHQNAH 66
                        99******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.5E-44270IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.86E-64271No hitNo description
PROSITE profilePS5015711.5724471IPR007087Zinc finger, C2H2
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAEVEYLAKS TTLKLFGINI NKSPENQTHH QPASDSESFM ARKYECQYCF REFANSQALG  60
GHQNAHKKER QLLKRAQMQA ARGFVASHVH NTIMSTFSPQ SQPPLPWLCA PHAWSSDSGV  120
AFVTPGRRVY ATAGASVTDG RGHRNTPAEI GGFNGGNGRG NGGGERGFGL DLHLSL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150371e-141AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007139171.11e-131hypothetical protein PHAVU_008G007400g
RefseqXP_007139172.11e-131hypothetical protein PHAVU_008G007400g
TrEMBLV7B0W51e-131V7B0W5_PHAVU; Uncharacterized protein
TrEMBLV7B4011e-131V7B401_PHAVU; Uncharacterized protein
STRINGGLYMA18G53300.11e-72(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.15e-14C2H2 family protein